Transcript: lnc-CANX-1:8

Basic information

LNCipedia transcript ID: lnc-CANX-1:8 
LNCipedia gene ID: lnc-CANX-1
Location (hg38): chr5:179664385-179668671
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 488 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010209; NONHSAT105613
Alternative gene names: XLOC_004677; linc-CANX-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.6776 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CANX-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC136604.1-1:5
3.1 lnc-AC136604.1-1:5
4.0 lnc-CANX-1:8
4.1 lnc-CANX-1:8
5.0 lnc-CANX-1:8
5.1 lnc-MAML1-3:9
5.2 lnc-CANX-1:8