Transcript: lnc-CAPN12-1:2

Basic information

LNCipedia transcript ID: lnc-CAPN12-1:2 
LNCipedia gene ID: lnc-CAPN12-1
Location (hg38): chr19:38683873-38693606
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 242 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000267375.1|ENST00000585999.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -194.8421 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CAPN12-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CAPN12-1:2
5.0 lnc-CAPN12-1:2
5.1 lnc-CCER2-14:2
5.2 lnc-CAPN12-1:2