Transcript: lnc-CAPN9-1:9

Basic information

LNCipedia transcript ID: lnc-CAPN9-1:9 
LNCipedia gene ID: lnc-CAPN9-1
Location (hg38): chr1:230868760-230879050
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6103 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000223393.1|ENCT00000018742.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 11.4371 non-coding 
CPAT coding probability 5.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CAPN9-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CAPN9-1:9
5.0 lnc-CAPN9-1:9
5.1 lnc-KCNK1-62:6
5.2 lnc-CAPN9-1:9