Transcript: lnc-CAPRIN1-6:3

Basic information

LNCipedia transcript ID: lnc-CAPRIN1-6:3 
LNCipedia gene ID: lnc-CAPRIN1-6
Ensembl Gene ID: ENSG00000184566
Ensembl Transcript ID: ENST00000610375
Location (hg38): chr11:33880643-33881800
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1158 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000610375.1
Alternative gene names: ENSG00000184566.3; RP13-786C16.1; AC132216.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -126.5908 non-coding 
CPAT coding probability 5.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CAPRIN1-6:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC132216.1-6:2
4.1 lnc-AC132216.1-6:2
5.0 lnc-AC132216.1-6:2
5.1 lnc-CAPRIN1-6:1
5.2 lnc-CAPRIN1-6:3