Transcript: lnc-CAPRIN2-2:7

Basic information

LNCipedia transcript ID: lnc-CAPRIN2-2:7 
LNCipedia gene ID: lnc-CAPRIN2-2
Location (hg38): chr12:30978308-30978936
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 629 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000612219.1
Alternative gene names: ENSG00000226472.7; RP11-551L14.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -65.0511 non-coding 
CPAT coding probability 16.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CAPRIN2-2:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CAPRIN2-2:7
4.1 lnc-CAPRIN2-2:7
5.0 lnc-CAPRIN2-2:7
5.1 lnc-WBP11-131:13
5.2 lnc-CAPRIN2-2:7