Transcript: lnc-CAPZA2-2:7

Basic information

LNCipedia transcript ID: lnc-CAPZA2-2:7 
LNCipedia gene ID: lnc-CAPZA2-2
RefSeq ID: NR_002329
Location (hg38): chr7:116953899-116959813
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1572 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_002329; NR_002329.1
Alternative gene names: ST7-OT4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.4685 non-coding 
CPAT coding probability 17.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CAPZA2-2:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CAPZA2-2:1
4.0 lnc-ST7-OT4-2:1
4.1 lnc-ST7-OT4-2:1
5.0 lnc-ST7-OT4-2:1
5.1 lnc-MET-2:1
5.2 lnc-CAPZA2-2:7