Transcript: lnc-CARD18-2:1

Basic information

LNCipedia transcript ID: lnc-CARD18-2:1 
LNCipedia gene ID: lnc-CARD18-2
Ensembl Gene ID: ENSG00000254998
Ensembl Transcript ID: ENST00000528811
Location (hg38): chr11:105157927-105531697
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 445 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528811.1; RP11-94P11.4-001; OTTHUMT00000388453.2; NONHSAT023955
Alternative gene names: ENSG00000254998.1; RP11-94P11.4; OTTHUMG00000166221.2; AP003181.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -175.6319 non-coding 
CPAT coding probability 3.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CARD18-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CARD18-2:1
4.0 lnc-CARD18-2:1
4.1 lnc-CARD18-2:1
5.0 lnc-CARD18-2:1
5.1 lnc-DCUN1D5-19:1
5.2 lnc-CARD18-2:1