Transcript: lnc-CARHSP1-1:1

Basic information

LNCipedia transcript ID: lnc-CARHSP1-1:1 
LNCipedia gene ID: lnc-CARHSP1-1
Ensembl Gene ID: ENSG00000260350
Ensembl Transcript ID: ENST00000567942
Location (hg38): chr16:8847650-8848724
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 430 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567942.1; RP11-152P23.2-001; OTTHUMT00000433942.1
Alternative gene names: ENSG00000260350.1; RP11-152P23.2; OTTHUMG00000176817.1; AC012173.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 35.829 non-coding 
CPAT coding probability 64.05% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CARHSP1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CARHSP1-1:1
4.0 lnc-CARHSP1-1:1
4.1 lnc-CARHSP1-1:1
5.0 lnc-CARHSP1-1:1
5.1 lnc-SEPT12-68:1
5.2 lnc-CARHSP1-1:1