Transcript: lnc-CASK-1:1

Basic information

LNCipedia transcript ID: lnc-CASK-1:1 
LNCipedia gene ID: lnc-CASK-1
Ensembl Gene ID: ENSG00000233103
Ensembl Transcript ID: ENST00000437466
Location (hg38): chrX:42047883-42054836
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 478 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017055; ENST00000437466; ENST00000437466.1; RP11-524P6.1-001; OTTHUMT00000056291.1; NONHSAT136750
Alternative gene names: XLOC_008148; linc-CASK; ENSG00000233103; RP11-524P6.1; ENSG00000233103.1; OTTHUMG00000021379.1; AL133329.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -170.6136 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CASK-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CASK-1:1
3.1 lnc-CASK-1:1
4.0 lnc-CASK-1:1
4.1 lnc-CASK-1:1
5.0 lnc-CASK-1:1
5.1 lnc-PCSK1N-60:1
5.2 lnc-CASK-1:1