Transcript: lnc-CASP6-4:1

Basic information

LNCipedia transcript ID: lnc-CASP6-4:1 
LNCipedia gene ID: lnc-CASP6-4
Location (hg38): chr4:109566924-109633859
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1433 bp
Exons: 8
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc003hzi_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.8504 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CASP6-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CASP6-4:1
4.0 lnc-CASP6-4:1
4.1 lnc-CASP6-4:1
5.0 lnc-CASP6-4:1
5.1 lnc-TIFA-23:1
5.2 lnc-CASP6-4:1