Transcript: lnc-CAST-6:1

Basic information

LNCipedia transcript ID: lnc-CAST-6:1 
LNCipedia gene ID: lnc-CAST-6
Ensembl Gene ID: ENSG00000272109
Ensembl Transcript ID: ENST00000606656
Location (hg38): chr5:96804353-96806102
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 474 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606656.1
Alternative gene names: ENSG00000272109.1; CTD-2260A17.3; AC008906.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -203.2131 non-coding 
CPAT coding probability 2.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CAST-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CAST-6:1
4.0 lnc-CAST-6:1
4.1 lnc-CAST-6:1
5.0 lnc-CAST-6:1
5.1 lnc-GPR150-29:1
5.2 lnc-CAST-6:1