Transcript: lnc-CATSPER3-2:5

Basic information

LNCipedia transcript ID: lnc-CATSPER3-2:5 
LNCipedia gene ID: lnc-CATSPER3-2
Ensembl Gene ID: ENSG00000224186
Ensembl Transcript ID: ENST00000505828
Location (hg38): chr5:135033442-135215565
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 561 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505828.1; CTC-349C3.1-001; OTTHUMT00000371596.1; NONHSAT103892; ENST00000505828.5
Alternative gene names: ENSG00000250513.1; CTC-349C3.1; OTTHUMG00000163075.1; ENSG00000224186.8; C5orf66


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -184.4823 non-coding 
CPAT coding probability 3.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CATSPER3-2:5 no no no no

Available literature

  1. Hrdlickova (2014), Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CATSPER3-2:2
4.0 lnc-CTC-203F4.1.1-2:4
4.1 lnc-CTC-203F4.1.1-2:4
5.0 lnc-CTC-203F4.1.1-2:4
5.1 lnc-PDLIM4-73:3
5.2 lnc-CATSPER3-2:5