Transcript: lnc-CATSPER3-2:6

Basic information

LNCipedia transcript ID: lnc-CATSPER3-2:6 
LNCipedia gene ID: lnc-CATSPER3-2
Location (hg38): chr5:135128155-135174172
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 340 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000513931.1; CTC-349C3.1-003; OTTHUMT00000371598.1; NONHSAT103898
Alternative gene names: ENSG00000250513.1; CTC-349C3.1; OTTHUMG00000163075.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -309.4116 non-coding 
CPAT coding probability 4.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CATSPER3-2:6 no no no no

Available literature

  1. Hrdlickova (2014), Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CATSPER3-2:3
4.0 lnc-CTC-203F4.1.1-2:5
4.1 lnc-CTC-203F4.1.1-2:5
5.0 lnc-CTC-203F4.1.1-2:5
5.1 lnc-PDLIM4-73:4
5.2 lnc-CATSPER3-2:6