Transcript: lnc-CBFA2T3-1:1

Basic information

LNCipedia transcript ID: lnc-CBFA2T3-1:1 
LNCipedia gene ID: lnc-CBFA2T3-1
Ensembl Gene ID: ENSG00000256982
Ensembl Transcript ID: ENST00000537498
Location (hg38): chr16:89046172-89052965
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2154 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000537498; ENST00000537498.1; CTD-2555A7.2-001; OTTHUMT00000430645.1; NONHSAT144461
Alternative gene names: ENSG00000256982; AC135782.1; ENSG00000256982.1; CTD-2555A7.2; OTTHUMG00000175614.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.1394 non-coding 
CPAT coding probability 34.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CBFA2T3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CBFA2T3-1:1
3.1 lnc-CBFA2T3-1:1
4.0 lnc-CBFA2T3-1:1
4.1 lnc-CBFA2T3-1:1
5.0 lnc-CBFA2T3-1:1
5.1 lnc-KLHDC4-42:1
5.2 lnc-CBFA2T3-1:1