Transcript: lnc-CBFA2T3-1:5

Basic information

LNCipedia transcript ID: lnc-CBFA2T3-1:5 
LNCipedia gene ID: lnc-CBFA2T3-1
Location (hg38): chr16:89040223-89052954
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 7147 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000256982.1|MICT00000138440.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 54.7975 non-coding 
CPAT coding probability 47.64% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CBFA2T3-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CBFA2T3-1:5
5.0 lnc-CBFA2T3-1:5
5.1 lnc-KLHDC4-42:2
5.2 lnc-CBFA2T3-1:5