Transcript: lnc-CBR3-1:1

Basic information

LNCipedia transcript ID: lnc-CBR3-1:1 
LNCipedia gene ID: lnc-CBR3-1
Ensembl Gene ID: ENSG00000233393
Ensembl Transcript ID: ENST00000422473
Location (hg38): chr21:36104881-36109690
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2336 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028843; ENST00000422473; ENST00000422473.1; AP000688.29-001; OTTHUMT00000331385.1; NONHSAT081942
Alternative gene names: XLOC_013931; linc-CBR3-1; ENSG00000233393; AP000688.29; ENSG00000233393.1; OTTHUMG00000153500.1; AP000688.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.082 non-coding 
CPAT coding probability 7.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CBR3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CBR3-1:1
3.1 lnc-CBR3-1:1
4.0 lnc-CBR3-1:1
4.1 lnc-CBR3-1:1
5.0 lnc-CBR3-1:1
5.1 lnc-SIM2-26:9
5.2 lnc-CBR3-1:1