Transcript: lnc-CBR3-1:3

Basic information

LNCipedia transcript ID: lnc-CBR3-1:3 
LNCipedia gene ID: lnc-CBR3-1
Location (hg38): chr21:36105054-36107842
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 331 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00029008
Alternative gene names: XLOC_013931; linc-CBR3-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 47.5013 non-coding 
CPAT coding probability 41.91% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CBR3-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CBR3-1:3
3.1 lnc-CBR3-1:3
4.0 lnc-CBR3-1:3
4.1 lnc-CBR3-1:3
5.0 lnc-CBR3-1:3
5.1 lnc-SIM2-26:12
5.2 lnc-CBR3-1:3