Transcript: lnc-CBWD3-1:1

Basic information

LNCipedia transcript ID: lnc-CBWD3-1:1 
LNCipedia gene ID: lnc-CBWD3-1
Ensembl Gene ID: ENSG00000226904
Ensembl Transcript ID: ENST00000425587
Location (hg38): chr9:68228651-68229312
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 340 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015686; ENST00000425587.1; RP11-561O23.8-001; OTTHUMT00000052545.1; NONHSAT131724
Alternative gene names: XLOC_007388; linc-CBWD3-3; ENSG00000226904.1; RP11-561O23.8; OTTHUMG00000019963.1; AL353608.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -178.5994 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CBWD3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CBWD3-1:1
3.1 lnc-CBWD3-1:1
4.0 lnc-CBWD3-1:1
4.1 lnc-CBWD3-1:1
5.0 lnc-CBWD3-1:1
5.1 lnc-ZNF658-16:1
5.2 lnc-CBWD3-1:1