Transcript: lnc-CBX2-1:1

Basic information

LNCipedia transcript ID: lnc-CBX2-1:1 
LNCipedia gene ID: lnc-CBX2-1
Location (hg38): chr17:79800598-79802527
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 605 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000570512.1; RP11-353N14.1-001; OTTHUMT00000437043.1; NONHSAT056312
Alternative gene names: ENSG00000262768.1; RP11-353N14.1; OTTHUMG00000177464.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.986 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CBX2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CBX2-1:1
4.0 lnc-CBX2-1:1
4.1 lnc-CBX2-1:1
5.0 lnc-CBX2-1:1
5.1 lnc-TSPAN10-114:1
5.2 lnc-CBX2-1:1