Transcript: lnc-CCAR1-1:1

Basic information

LNCipedia transcript ID: lnc-CCAR1-1:1 
LNCipedia gene ID: lnc-CCAR1-1
Location (hg38): chr10:68799249-68799859
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 611 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT013741; FPKM1_group_3447_transcript_4
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.2474 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCAR1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCAR1-1:1
4.0 lnc-CCAR1-1:1
4.1 lnc-CCAR1-1:1
5.0 lnc-CCAR1-1:1
5.1 lnc-MTRNR2L5-95:1
5.2 lnc-CCAR1-1:1