Transcript: lnc-CCAR2-2:10

Basic information

LNCipedia transcript ID: lnc-CCAR2-2:10 
LNCipedia gene ID: lnc-CCAR2-2
Ensembl Gene ID: ENSG00000253125
Ensembl Transcript ID: ENST00000521141
Location (hg38): chr8:22747503-22758192
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1630 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521141.1; RP11-459E5.1-003; OTTHUMT00000375192.1; NONHSAT125513
Alternative gene names: ENSG00000253125.1; RP11-459E5.1; OTTHUMG00000163751.1; AC055854.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -149.4013 non-coding 
CPAT coding probability 1.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCAR2-2:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA1967-2:3
4.0 lnc-KIAA1967-2:3
4.1 lnc-KIAA1967-2:3
5.0 lnc-KIAA1967-2:3
5.1 lnc-RHOBTB2-18:10
5.2 lnc-CCAR2-2:10