Transcript: lnc-CCAR2-2:5

Basic information

LNCipedia transcript ID: lnc-CCAR2-2:5 
LNCipedia gene ID: lnc-CCAR2-2
Location (hg38): chr8:22739509-22753297
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 531 bp
Exons: 4
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1308:3
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -100.3351 non-coding 
CPAT coding probability 12.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCAR2-2:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-KIAA1967-2:6
4.1 lnc-KIAA1967-2:6
5.0 lnc-KIAA1967-2:6
5.1 lnc-RHOBTB2-18:5
5.2 lnc-CCAR2-2:5