Transcript: lnc-CCDC102B-7:1

Basic information

LNCipedia transcript ID: lnc-CCDC102B-7:1 
LNCipedia gene ID: lnc-CCDC102B-7
Ensembl Gene ID: ENSG00000265533
Ensembl Transcript ID: ENST00000583687
RefSeq ID: NR_033921
Location (hg38): chr18:67516546-67899619
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2991 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000583687.1; RP11-638L3.1-001; OTTHUMT00000442415.1; NONHSAT059720; NR_033921; NR_033921.1
Alternative gene names: ENSG00000265533.1; RP11-638L3.1; OTTHUMG00000178538.1; AC114689.3; LOC643542


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.6669 non-coding 
CPAT coding probability 3.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC102B-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC102B-7:1
4.0 lnc-CCDC102B-7:1
4.1 lnc-CCDC102B-7:1
5.0 lnc-CCDC102B-7:1
5.1 lnc-WDR7-94:2
5.2 lnc-CCDC102B-7:1