Transcript: lnc-CCDC107-1:1

Basic information

LNCipedia transcript ID: lnc-CCDC107-1:1 
LNCipedia gene ID: lnc-CCDC107-1
Ensembl Gene ID: ENSG00000227933
Ensembl Transcript ID: ENST00000428948
Location (hg38): chr9:35646270-35647099
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 574 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428948.1; RP11-331F9.4-001; OTTHUMT00000052321.1; NONHSAT130961
Alternative gene names: ENSG00000227933.1; RP11-331F9.4; OTTHUMG00000019866.1; AL357874.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -544.074 non-coding 
CPAT coding probability 36.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC107-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC107-1:1
4.0 lnc-CCDC107-1:1
4.1 lnc-CCDC107-1:1
5.0 lnc-CCDC107-1:1
5.1 lnc-RECK-12:1
5.2 lnc-CCDC107-1:1