Transcript: lnc-CCDC117-1:12

Basic information

LNCipedia transcript ID: lnc-CCDC117-1:12 
LNCipedia gene ID: lnc-CCDC117-1
Location (hg38): chr22:28800689-28846512
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 857 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000226471.2|MICT00000231704.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 82.1589 coding 
CPAT coding probability 6.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCDC117-1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CCDC117-1:12
5.0 lnc-CCDC117-1:12
5.1 lnc-OSBP2-35:6
5.2 lnc-CCDC117-1:12