Transcript: lnc-CCDC117-1:4

Basic information

LNCipedia transcript ID: lnc-CCDC117-1:4 
LNCipedia gene ID: lnc-CCDC117-1
Ensembl Gene ID: ENSG00000226471
Ensembl Transcript ID: ENST00000451486
Location (hg38): chr22:28801892-28822215
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 347 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451486.1; CTA-292E10.6-003; OTTHUMT00000321272.1; NONHSAT084660; ENST00000451486.5
Alternative gene names: ENSG00000226471.2; CTA-292E10.6; OTTHUMG00000151093.2; ENSG00000226471.6; Z93930.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.6282 non-coding 
CPAT coding probability 9.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC117-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC117-1:4
4.0 lnc-CCDC117-1:4
4.1 lnc-CCDC117-1:4
5.0 lnc-CCDC117-1:4
5.1 lnc-OSBP2-35:11
5.2 lnc-CCDC117-1:4