Transcript: lnc-CCDC140-1:2

Basic information

LNCipedia transcript ID: lnc-CCDC140-1:2 
LNCipedia gene ID: lnc-CCDC140-1
RefSeq ID: NR_136638
Location (hg38): chr2:222318471-222321722
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1156 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000555502; ENST00000555502.1; AC010980.2-005; OTTHUMT00000411488.1; NR_136638.1
Alternative gene names: ENSG00000237732; AC010980.2; ENSG00000237732.4; OTTHUMG00000153406.2; LOC440934


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 255.3145 coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCDC140-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC140-1:2
3.1 lnc-CCDC140-1:2
4.0 lnc-CCDC140-1:2
4.1 lnc-CCDC140-1:2
5.0 lnc-CCDC140-1:2
5.1 lnc-MOGAT1-10:4
5.2 lnc-CCDC140-1:2