Transcript: lnc-CCDC140-1:6

Basic information

LNCipedia transcript ID: lnc-CCDC140-1:6 
LNCipedia gene ID: lnc-CCDC140-1
Location (hg38): chr2:222321106-222321538
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 343 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000439237; ENST00000439237.1; AC010980.2-004; OTTHUMT00000331056.1; NONHSAT077123
Alternative gene names: ENSG00000237732; AC010980.2; ENSG00000237732.4; OTTHUMG00000153406.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -244.2984 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC140-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC140-1:6
3.1 lnc-CCDC140-1:6
4.0 lnc-CCDC140-1:6
4.1 lnc-CCDC140-1:6
5.0 lnc-CCDC140-1:6
5.1 lnc-MOGAT1-10:18
5.2 lnc-CCDC140-1:6