Transcript: lnc-CCDC144A-1:7

Basic information

LNCipedia transcript ID: lnc-CCDC144A-1:7 
LNCipedia gene ID: lnc-CCDC144A-1
Ensembl Gene ID: ENSG00000272815
Ensembl Transcript ID: ENST00000602730
Location (hg38): chr17:16788057-16816540
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3243 bp
Exons: 11
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT146004; ENST00000602730.1
Alternative gene names: ENSG00000272815.1; RP11-219A15.4; AC098850.5; AC098850.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 234.1656 coding 
CPAT coding probability 87.54% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCDC144A-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC144A-1:7
4.0 lnc-CCDC144A-1:7
4.1 lnc-CCDC144A-1:7
5.0 lnc-CCDC144A-1:7
5.1 lnc-GLP2R-89:5
5.2 lnc-CCDC144A-1:7