Transcript: lnc-CCDC171-10:1

Basic information

LNCipedia transcript ID: lnc-CCDC171-10:1 
LNCipedia gene ID: lnc-CCDC171-10
Location (hg38): chr9:16121133-16122434
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 312 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015651; ENST00000443838; ENST00000443838.1; RP11-536D16.2-001; OTTHUMT00000051772.1; NONHSAT130284
Alternative gene names: XLOC_007291; linc-CNTLN-4; ENSG00000224211; RP11-536D16.2; ENSG00000224211.1; OTTHUMG00000019587.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -210.3345 non-coding 
CPAT coding probability 5.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC171-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf93-1:1
3.1 lnc-C9orf93-1:1
4.0 lnc-C9orf93-10:1
4.1 lnc-C9orf93-10:1
5.0 lnc-C9orf93-10:1
5.1 lnc-RECK-185:1
5.2 lnc-CCDC171-10:1