Transcript: lnc-CCDC175-1:1

Basic information

LNCipedia transcript ID: lnc-CCDC175-1:1 
LNCipedia gene ID: lnc-CCDC175-1
Ensembl Gene ID: ENSG00000258782
Ensembl Transcript ID: ENST00000554253
Location (hg38): chr14:59479274-59525437
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 671 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554253.1; RP11-701B16.2-001; OTTHUMT00000411636.1
Alternative gene names: ENSG00000258782.2; RP11-701B16.2; OTTHUMG00000171095.1; ENSG00000258782.3; AL121694.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -257.3067 non-coding 
CPAT coding probability 59.44% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCDC175-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C14orf38-1:1
4.0 lnc-C14orf38-1:1
4.1 lnc-C14orf38-1:1
5.0 lnc-C14orf38-1:1
5.1 lnc-RTN1-5:1
5.2 lnc-CCDC175-1:1