Transcript: lnc-CCDC179-3:2

Basic information

LNCipedia transcript ID: lnc-CCDC179-3:2 
LNCipedia gene ID: lnc-CCDC179-3
Ensembl Gene ID: ENSG00000254594
Ensembl Transcript ID: ENST00000527283
Location (hg38): chr11:24235477-24262205
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 554 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000527283; ENST00000527283.1; RP11-2F20.1-002; OTTHUMT00000387857.1; NONHSAT018436; ENST00000527283.5
Alternative gene names: ENSG00000254594; RP11-2F20.1; ENSG00000254594.1; OTTHUMG00000166108.1; ENSG00000254594.5; AC015771.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -146.0161 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC179-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-17A1.2.1-3:2
3.1 lnc-RP11-17A1.2.1-3:2
4.0 lnc-RP11-17A1.2.1-3:2
4.1 lnc-RP11-17A1.2.1-3:2
5.0 lnc-RP11-17A1.2.1-3:2
5.1 lnc-TPH1-40:2
5.2 lnc-CCDC179-3:2