Transcript: lnc-CCDC182-2:1

Basic information

LNCipedia transcript ID: lnc-CCDC182-2:1 
LNCipedia gene ID: lnc-CCDC182-2
Ensembl Gene ID: ENSG00000266100
Ensembl Transcript ID: ENST00000577189
RefSeq ID: NR_110808
Location (hg38): chr17:57522248-57523597
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 563 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000577189.1; RP11-118E18.2-001; OTTHUMT00000441835.1; NONHSAT054890; NR_110808; NR_110808.1
Alternative gene names: ENSG00000266100.1; RP11-118E18.2; OTTHUMG00000178403.1; AC007431.2; LOC101927557


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.944 non-coding 
CPAT coding probability 1.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC182-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC007431.1.1-2:1
4.0 lnc-AC007431.1.1-2:1
4.1 lnc-AC007431.1.1-2:1
5.0 lnc-AC007431.1.1-2:1
5.1 lnc-PTRH2-40:1
5.2 lnc-CCDC182-2:1