Transcript: lnc-CCDC187-2:3

Basic information

LNCipedia transcript ID: lnc-CCDC187-2:3 
LNCipedia gene ID: lnc-CCDC187-2
Ensembl Gene ID: ENSG00000262075
Ensembl Transcript ID: ENST00000601276
Location (hg38): chr9:136322303-136325218
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2916 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000601276.2
Alternative gene names: ENSG00000262075.3; DKFZP434A062; AC174065.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 49.56% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCDC187-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-CCDC187-2:3
5.1 lnc-CCDC187-2:3
5.2 lnc-CCDC187-2:3