Transcript: lnc-CCDC189-1:1

Basic information

LNCipedia transcript ID: lnc-CCDC189-1:1 
LNCipedia gene ID: lnc-CCDC189-1
Ensembl Gene ID: ENSG00000261840
Ensembl Transcript ID: ENST00000568500
Location (hg38): chr16:30697713-30699058
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1142 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568500.1; RP11-146F11.1-002; OTTHUMT00000434317.1
Alternative gene names: ENSG00000261840.1; RP11-146F11.1; OTTHUMG00000176915.1; ENSG00000261840.2; AC093249.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.4996 non-coding 
CPAT coding probability 94.65% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCDC189-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C16orf93-1:1
4.0 lnc-C16orf93-1:1
4.1 lnc-C16orf93-1:1
5.0 lnc-C16orf93-1:1
5.1 lnc-SULT1A2-92:1
5.2 lnc-CCDC189-1:1