Transcript: lnc-CCDC189-1:2

Basic information

LNCipedia transcript ID: lnc-CCDC189-1:2 
LNCipedia gene ID: lnc-CCDC189-1
Location (hg38): chr16:30697424-30699002
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1579 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000261840.1|MICT00000130372.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -34.7589 non-coding 
CPAT coding probability 58.45% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCDC189-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C16orf93-1:5
5.0 lnc-C16orf93-1:5
5.1 lnc-SULT1A2-92:2
5.2 lnc-CCDC189-1:2