Transcript: lnc-CCDC189-1:5

Basic information

LNCipedia transcript ID: lnc-CCDC189-1:5 
LNCipedia gene ID: lnc-CCDC189-1
Location (hg38): chr16:30697709-30698961
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 304 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000564775.1; RP11-146F11.1-001; OTTHUMT00000434316.1; NONHSAT141803
Alternative gene names: ENSG00000261840.1; RP11-146F11.1; OTTHUMG00000176915.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -277.0031 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC189-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C16orf93-1:2
4.0 lnc-C16orf93-1:2
4.1 lnc-C16orf93-1:2
5.0 lnc-C16orf93-1:2
5.1 lnc-SULT1A2-92:5
5.2 lnc-CCDC189-1:5