Transcript: lnc-CCDC39-1:4

Basic information

LNCipedia transcript ID: lnc-CCDC39-1:4 
LNCipedia gene ID: lnc-CCDC39-1
Ensembl Gene ID: ENSG00000285336
Ensembl Transcript ID: ENST00000485055
RefSeq ID: NR_109986
Location (hg38): chr3:180707589-180870178
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2874 bp
Exons: 14
Sources: NONCODE v4; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT093444; NR_109986.1; ENST00000485055.5
Alternative gene names: LOC101928882; ENSG00000285336.1; AC108734.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.5656 non-coding 
CPAT coding probability 6.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC39-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DNAJC19-1:4
4.0 lnc-CCDC39-1:4
4.1 lnc-CCDC39-1:4
5.0 lnc-CCDC39-1:4
5.1 lnc-CCDC39-1:4
5.2 lnc-CCDC39-1:4