Transcript: lnc-CCDC40-1:1

Basic information

LNCipedia transcript ID: lnc-CCDC40-1:1 
LNCipedia gene ID: lnc-CCDC40-1
Ensembl Gene ID: ENSG00000261978
Ensembl Transcript ID: ENST00000575404
Location (hg38): chr17:80023894-80026107
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 415 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000575404.1; CTD-2529O21.2-001; OTTHUMT00000437420.1; NONHSAT056330
Alternative gene names: ENSG00000261978.1; CTD-2529O21.2; OTTHUMG00000177536.1; AC116025.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.8227 non-coding 
CPAT coding probability 2.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC40-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC40-1:1
4.0 lnc-CCDC40-1:1
4.1 lnc-CCDC40-1:1
5.0 lnc-CCDC40-1:1
5.1 lnc-TSPAN10-110:2
5.2 lnc-CCDC40-1:1