Transcript: lnc-CCDC57-1:1

Basic information

LNCipedia transcript ID: lnc-CCDC57-1:1 
LNCipedia gene ID: lnc-CCDC57-1
Location (hg38): chr17:82214227-82217352
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3051 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000508570; TCONS_00025256; NONHSAT056651
Alternative gene names: ENSG00000248630; XLOC_012590; linc-CCDC57; AC132872.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.0268 non-coding 
CPAT coding probability 78.76% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCDC57-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC57-1:1
3.1 lnc-CCDC57-1:1
4.0 lnc-CCDC57-1:1
4.1 lnc-CCDC57-1:1
5.0 lnc-CCDC57-1:1
5.1 lnc-CD7-9:1
5.2 lnc-CCDC57-1:1