Transcript: lnc-CCDC7-18:1

Basic information

LNCipedia transcript ID: lnc-CCDC7-18:1 
LNCipedia gene ID: lnc-CCDC7-18
Ensembl Gene ID: ENSG00000203565
Ensembl Transcript ID: ENST00000366376
Location (hg38): chr10:33684755-33687064
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 452 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017810; ENST00000366376; ENST00000366376.2; RP13-259N13.2-001; OTTHUMT00000047518.1; NONHSAT012683
Alternative gene names: XLOC_008446; linc-CREM-3; ENSG00000203565; RP13-259N13.2; ENSG00000203565.2; OTTHUMG00000017940.1; AL450313.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.155 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC7-18:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf68-3:1
3.1 lnc-C10orf68-5:1
4.0 lnc-C10orf68-5:1
4.1 lnc-C10orf68-5:1
5.0 lnc-C10orf68-5:1
5.1 lnc-NPY4R2-160:1
5.2 lnc-CCDC7-18:1