Transcript: lnc-CCDC7-21:1

Basic information

LNCipedia transcript ID: lnc-CCDC7-21:1 
LNCipedia gene ID: lnc-CCDC7-21
Ensembl Gene ID: ENSG00000223470
Ensembl Transcript ID: ENST00000434552
Location (hg38): chr10:33909238-33917804
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 631 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017811; ENST00000434552; ENST00000434552.1; RP11-490O24.2-001; OTTHUMT00000047520.1; NONHSAT012691; ENST00000434552.3
Alternative gene names: XLOC_008447; linc-CREM-2; ENSG00000223470; RP11-490O24.2; ENSG00000223470.1; OTTHUMG00000017942.1; ENSG00000223470.3; AL117338.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.6691 non-coding 
CPAT coding probability 2.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC7-21:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf68-4:1
3.1 lnc-C10orf68-6:1
4.0 lnc-C10orf68-6:1
4.1 lnc-C10orf68-6:1
5.0 lnc-C10orf68-6:1
5.1 lnc-NPY4R2-157:1
5.2 lnc-CCDC7-21:1