Transcript: lnc-CCDC71L-1:4

Basic information

LNCipedia transcript ID: lnc-CCDC71L-1:4 
LNCipedia gene ID: lnc-CCDC71L-1
Ensembl Gene ID: ENSG00000243797
Ensembl Transcript ID: ENST00000592441
Location (hg38): chr7:106489724-106770207
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 701 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT122654; ENST00000592441.1
Alternative gene names: ENSG00000243797.2; CTB-111H14.1; ENSG00000243797.6; AC004917.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.4128 non-coding 
CPAT coding probability 2.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC71L-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC71L-1:4
4.0 lnc-CCDC71L-1:4
4.1 lnc-CCDC71L-1:4
5.0 lnc-CCDC71L-1:4
5.1 lnc-NRCAM-25:5
5.2 lnc-CCDC71L-1:4