Transcript: lnc-CCDC74A-2:3

Basic information

LNCipedia transcript ID: lnc-CCDC74A-2:3 
LNCipedia gene ID: lnc-CCDC74A-2
Ensembl Gene ID: ENSG00000244337
Ensembl Transcript ID: ENST00000421696
Location (hg38): chr2:131958277-131965535
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 575 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003006; ENST00000421696; ENST00000421696.2; AJ239322.3-001; OTTHUMT00000336348.2; NONHSAT074500
Alternative gene names: XLOC_001678; linc-GPR39-3; ENSG00000244337; AJ239322.3; ENSG00000244337.2; OTTHUMG00000154620.2; AJ239322.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.445 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC74A-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C2orf27A-2:1
3.1 lnc-C2orf27A-2:1
4.0 lnc-C2orf27A-2:1
4.1 lnc-C2orf27A-2:1
5.0 lnc-C2orf27A-2:1
5.1 lnc-GPR17-69:1
5.2 lnc-CCDC74A-2:3