Transcript: lnc-CCDC82-3:3

Basic information

LNCipedia transcript ID: lnc-CCDC82-3:3 
LNCipedia gene ID: lnc-CCDC82-3
Ensembl Gene ID: ENSG00000255502
Ensembl Transcript ID: ENST00000526385
Location (hg38): chr11:97878781-97942762
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 546 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526385.1; RP11-379J13.2-002; OTTHUMT00000395299.1; NONHSAT023821; ENST00000526385.5
Alternative gene names: ENSG00000255502.1; RP11-379J13.2; OTTHUMG00000167597.1; ENSG00000255502.5; AP003730.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -285.5374 non-coding 
CPAT coding probability 1.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC82-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC82-3:3
4.0 lnc-CCDC82-3:3
4.1 lnc-CCDC82-3:3
5.0 lnc-CCDC82-3:3
5.1 lnc-PGR-14:3
5.2 lnc-CCDC82-3:3