Transcript: lnc-CCDC85A-2:7

Basic information

LNCipedia transcript ID: lnc-CCDC85A-2:7 
LNCipedia gene ID: lnc-CCDC85A-2
Location (hg38): chr2:56118686-56119122
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 437 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000272180.1|FTMT20800002879.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -151.5075 non-coding 
CPAT coding probability 2.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCDC85A-2:7 no no no no

Available literature

  1. Sun (2015), A potential prognostic long non-coding RNA signature to predict metastasis-free survival of breast cancer patients., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CCDC85A-2:7
5.0 lnc-CCDC85A-2:7
5.1 lnc-PAPOLG-62:6
5.2 lnc-CCDC85A-2:7