Transcript: lnc-CCDC85C-1:1

Basic information

LNCipedia transcript ID: lnc-CCDC85C-1:1 
LNCipedia gene ID: lnc-CCDC85C-1
Ensembl Gene ID: ENSG00000258672
Ensembl Transcript ID: ENST00000555875
Location (hg38): chr14:99691445-99693648
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 493 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555875; ENST00000555875.1; RP11-543C4.3-001; OTTHUMT00000413820.1; NONHSAT039630
Alternative gene names: ENSG00000258672; RP11-543C4.3; ENSG00000258672.1; OTTHUMG00000171511.1; AL160313.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 134.0465 coding 
CPAT coding probability 2.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCDC85C-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC85C-1:1
3.1 lnc-CCDC85C-1:1
4.0 lnc-CCDC85C-1:1
4.1 lnc-CCDC85C-1:1
5.0 lnc-CCDC85C-1:1
5.1 lnc-CCDC85C-1:1
5.2 lnc-CCDC85C-1:1