Transcript: lnc-CCKAR-18:1

Basic information

LNCipedia transcript ID: lnc-CCKAR-18:1 
LNCipedia gene ID: lnc-CCKAR-18
Location (hg38): chr4:29962644-29963758
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 777 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT095931
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
GMYLTLTKWDPCSK 92.3076923076923% sense-1
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.4913 non-coding 
CPAT coding probability 3.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCKAR-18:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-180C1.1.1-7:1
4.0 lnc-RP11-180C1.1.1-7:1
4.1 lnc-RP11-180C1.1.1-7:1
5.0 lnc-RP11-180C1.1.1-7:1
5.1 lnc-GABRA4-84:1
5.2 lnc-CCKAR-18:1