Transcript: lnc-CCKAR-1:13

Basic information

LNCipedia transcript ID: lnc-CCKAR-1:13 
LNCipedia gene ID: lnc-CCKAR-1
RefSeq ID: NR_134675
Location (hg38): chr4:26859624-26860244
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 512 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_134675.1
Alternative gene names: LOC105374546


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -91.2619 non-coding 
CPAT coding probability 1.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCKAR-1:13 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-AFAP1-150:13
5.1 lnc-AFAP1-150:13
5.2 lnc-CCKAR-1:13