Transcript: lnc-CCL1-11:1

Basic information

LNCipedia transcript ID: lnc-CCL1-11:1 
LNCipedia gene ID: lnc-CCL1-11
Ensembl Gene ID: ENSG00000283417
Ensembl Transcript ID: ENST00000637454
Location (hg38): chr17:33791838-33816761
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2396 bp
Exons: 3
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000637454.1
Alternative gene names: ENSG00000283417.1; RP11-118G23.3; AC024614.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 20.3225 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCL1-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CCL1-11:1
5.0 lnc-CCL1-11:1
5.1 lnc-SLC6A4-141:1
5.2 lnc-CCL1-11:1